{
  "_id": "6a1f238bb401979e73420b74",
  "Package": "survParamSim",
  "Type": "Package",
  "Title": "Parametric Survival Simulation with Parameter Uncertainty",
  "Version": "0.1.7.9000",
  "Authors@R": "c(\nperson(\"Kenta\", \"Yoshida\", , \"yoshida.kenta.6@gmail.com\", c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-4967-3831\")),\nperson(\"Laurent\", \"Claret\", , , c(\"aut\")))",
  "Description": "Perform survival simulation with parametric survival model\ngenerated from 'survreg' function in 'survival' package. In\neach simulation coefficients are resampled from\nvariance-covariance matrix of parameter estimates to capture\nuncertainty in model parameters. Prediction intervals of\nKaplan-Meier estimates and hazard ratio of treatment effect can\nbe further calculated using simulated survival data.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Language": "en-US",
  "URL": "https://github.com/yoshidk6/survParamSim,\nhttps://yoshidk6.github.io/survParamSim/",
  "BugReports": "https://github.com/yoshidk6/survParamSim/issues",
  "VignetteBuilder": "knitr",
  "RdMacros": "lifecycle",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://yoshidk6.r-universe.dev",
  "Date/Publication": "2025-07-15 15:09:13 UTC",
  "RemoteUrl": "https://github.com/yoshidk6/survparamsim",
  "RemoteRef": "HEAD",
  "RemoteSha": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-16 06:51:29 UTC",
    "User": "root"
  },
  "Author": "Kenta Yoshida [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4967-3831>),\nLaurent Claret [aut]",
  "Maintainer": "Kenta Yoshida <yoshida.kenta.6@gmail.com>",
  "MD5sum": "937287ca9760465dc445deaba143d9fa",
  "_user": "yoshidk6",
  "_type": "src",
  "_file": "survParamSim_0.1.7.9000.tar.gz",
  "_fileid": "f1a1e8cc3fc25feea3ebbebc40d437052da760517d8fead5881f514e20f2f955",
  "_filesize": 703752,
  "_sha256": "f1a1e8cc3fc25feea3ebbebc40d437052da760517d8fead5881f514e20f2f955",
  "_created": "2026-05-16T06:51:29.000Z",
  "_published": "2026-06-02T18:40:11.447Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79145496787,
      "time": 195,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7031373747"
    },
    {
      "job": 79145497133,
      "time": 178,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031371520"
    },
    {
      "job": 79145496788,
      "time": 328,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7031384043"
    },
    {
      "job": 79145497252,
      "time": 192,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031370489"
    },
    {
      "job": 79145496268,
      "time": 303,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031348958"
    },
    {
      "job": 79145496217,
      "time": 133,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7366711271"
    },
    {
      "job": 79145496928,
      "time": 146,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7031367604"
    },
    {
      "job": 79145496987,
      "time": 139,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7031366608"
    },
    {
      "job": 79145496855,
      "time": 132,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031365852"
    }
  ],
  "_buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/yoshidk6/survparamsim",
  "_commit": {
    "id": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
    "author": "Kenta Yoshida <yoshida.kenta.6@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update DESCRIPTION",
    "time": 1752592153
  },
  "_maintainer": {
    "name": "Kenta Yoshida",
    "email": "yoshida.kenta.6@gmail.com",
    "login": "yoshidk6",
    "uuid": 2650321,
    "orcid": "0000-0003-4967-3831"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "broom",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "eha",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "version": ">= 0.2.0",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "version": ">= 1.5",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "survival",
      "version": ">= 2.43",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "version": ">= 1.1",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "survminer",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.1.0",
      "role": "Suggests"
    },
    {
      "package": "vdiffr",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    },
    {
      "package": "flexsurv",
      "version": ">= 2.2",
      "role": "Suggests"
    }
  ],
  "_owner": "yoshidk6",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-29",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "yoshidk6",
      "count": 163,
      "uuid": 2650321
    }
  ],
  "_userbio": {
    "uuid": 2650321,
    "type": "user",
    "name": "Kenta Yoshida",
    "description": "Clinical Pharmacology Modeling & Simulation Scientist (aka Pharmacometrician)"
  },
  "_downloads": {
    "count": 567,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/survParamSim"
  },
  "_devurl": "https://github.com/yoshidk6/survparamsim",
  "_pkgdown": "https://yoshidk6.github.io/survParamSim/",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/survParamSim.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/yoshidk6/survparamsim",
  "_realowner": "yoshidk6",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2020-01-13"
    },
    {
      "version": "0.1.1",
      "date": "2020-05-12"
    },
    {
      "version": "0.1.2",
      "date": "2020-06-18"
    },
    {
      "version": "0.1.3",
      "date": "2020-11-24"
    },
    {
      "version": "0.1.4",
      "date": "2020-12-08"
    },
    {
      "version": "0.1.5",
      "date": "2021-04-26"
    },
    {
      "version": "0.1.6",
      "date": "2022-06-03"
    },
    {
      "version": "0.1.7",
      "date": "2025-05-02"
    }
  ],
  "_exports": [
    "%>%",
    "calc_ave_hr_pi",
    "calc_ave_km_pi",
    "calc_hr_pi",
    "calc_km_pi",
    "extract_hr",
    "extract_hr_pi",
    "extract_km_obs",
    "extract_km_pi",
    "extract_median_surv",
    "extract_medsurv",
    "extract_medsurv_delta",
    "extract_medsurv_delta_pi",
    "extract_medsurv_pi",
    "extract_sim",
    "plot_hr_pi",
    "plot_km_pi",
    "surv_param_sim",
    "surv_param_sim_pre_resampled",
    "surv_param_sim_resample"
  ],
  "_help": [
    {
      "page": "calculate_hr_pi",
      "title": "Generate hazard ratio with prediction intervals from parametric bootstrap simulation",
      "topics": [
        "calculate_hr_pi",
        "calc_ave_hr_pi",
        "calc_hr_pi"
      ]
    },
    {
      "page": "calculate_km_pi",
      "title": "Generate Kaplan-Meier curves with prediction intervals using simulated survival time",
      "topics": [
        "calculate_km_pi",
        "calc_ave_km_pi",
        "calc_km_pi"
      ]
    },
    {
      "page": "extractpi_deprecated",
      "title": "Functions to extract prediction intervals and observed data",
      "topics": [
        "extract_median_surv"
      ]
    },
    {
      "page": "extractpi",
      "title": "Functions to extract prediction intervals and observed data",
      "topics": [
        "extractpi",
        "extract_hr_pi",
        "extract_km_pi",
        "extract_medsurv_delta_pi",
        "extract_medsurv_pi"
      ]
    },
    {
      "page": "extractrawsim",
      "title": "Functions to extract raw simulated samples",
      "topics": [
        "extractrawsim",
        "extract_hr",
        "extract_km_obs",
        "extract_medsurv",
        "extract_medsurv_delta",
        "extract_sim"
      ]
    },
    {
      "page": "plot_hr_pi",
      "title": "Plot simulated HR histogram(s) overlayed with prediction intervals",
      "topics": [
        "plot_hr_pi"
      ]
    },
    {
      "page": "plot_km_pi",
      "title": "Plot Kaplan-Meier curves with prediction intervals from parametric bootstrap simulation",
      "topics": [
        "plot_km_pi"
      ]
    },
    {
      "page": "survparamsim-methods",
      "title": "Methods for S3 objects in the package",
      "topics": [
        "print.survparamsim",
        "print.survparamsim.hrpi",
        "print.survparamsim.kmpi",
        "summary.survparamsim.hrpi",
        "summary.survparamsim.kmpi",
        "survparamsim-methods"
      ]
    },
    {
      "page": "surv_param_sim_pre_resampled",
      "title": "Simulation of parametric survival model with an already-resampled dataset",
      "topics": [
        "surv_param_sim_pre_resampled"
      ]
    },
    {
      "page": "survparamsim",
      "title": "Simulation of parametric survival model",
      "topics": [
        "survparamsim",
        "surv_param_sim",
        "surv_param_sim_resample"
      ]
    }
  ],
  "_readme": "https://github.com/yoshidk6/survparamsim/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "broom",
    "cli",
    "cpp11",
    "dplyr",
    "eha",
    "farver",
    "forcats",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "survParamSim.Rmd",
      "filename": "survParamSim.html",
      "title": "survParamSim",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fit model with survreg() function",
        "Perform simulation",
        "Survival time profile",
        "Hazard ratios (HRs)"
      ],
      "created": "2019-12-18 05:41:24",
      "modified": "2023-05-23 12:27:26",
      "commits": 5
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "survparamsim",
  "_universes": [
    "yoshidk6"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:55:14.000Z",
      "distro": "noble",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "65dc37048e897123fe2c75e11d046f7246fe4434b1a91925c70f2334d2d99f59",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:54:59.000Z",
      "distro": "noble",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "1d25875b2ed25aeabebe9f1f29fc710fe9e2cab03d0a3504aa24ac7a9ee0f83e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:56:24.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "5c8c9402252bb4a7ab72f4b55a8beada9ae0a0bd13d74aa2551e24c82f56b0e1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:54:56.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "190aaa18cc3104ad7b8fb4634d3f6d83bfda4644dd9045f73e0276941d31ab4d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:54:12.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "0d1110400399571b9ed7c4d54fe5ef6fc55d6f31d4bf400842038a5c5a8bb67f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:54:01.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "fb1e742f696bade547c887f566978fec6d3bf1066375d372b234166ffcc4abb7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.7.9000",
      "date": "2026-05-16T06:53:57.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "2a53258f4bbb45f95373d869e50c9a551934fc538f431ccaf908bb8e6c11e97c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.7.9000",
      "date": "2026-06-02T18:39:45.000Z",
      "commit": "9ce603e8bae94c852d64e4d9c1751b4904f3c782",
      "fileid": "db33b9b3a79a814790eb40503b871b8a22ad7a367e58c4f72007078d04a4e37d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/yoshidk6/actions/runs/25955367776"
    }
  ]
}